Publications 📚¶ Peer-reviewed articles and preprints automatically synced from OpenAlex (9 publications • 1,049 total citations). 2026¶ Contribution of nosocomial transmission to Klebsiella pneumoniae neonatal sepsis in Africa and South Asia: An observational study of infection clusters inferred from pathogen genomics and temporal data Odih EE, Abdulahi JA, Amulele AV, Bates M, Heinz E, Hu W, …, Stanton TD, et al. 2025¶ Anti-plasmid defense in hypervirulent Klebsiella pneumoniae involves Type I-like and Type IV restriction modification systems Oo G, Low WW, Yong M, Stanton TD, Ayuni NN, Bifani PJ, Wyres KL, Gan Y Fast and accurate in silico antigen typing with Kaptive 3 Stanton TD, Hetland MAK, Löhr IH, Holt KE, Wyres KL The characterization of Klebsiella pneumoniae associated with neonatal sepsis in low- and middle-income countries to inform vaccine design Nonne F, Molfetta M, Belciug GF, Carducci M, Cianchi V, Zakroff C, …, Stanton TD, et al. Targeted sequencing of Enterobacterales bacteria using CRISPR-Cas9 enrichment and Oxford Nanopore Technologies Cottingham H, Judd LM, Wisniewski JA, Wick RR, Stanton TD, Vezina B, MaćeÅ¡ić N, et al. 2024¶ What defines hypervirulent Klebsiella pneumoniae? Stanton TD, Wyres KL 2023¶ Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae Foster-Nyarko E, Cottingham H, Wick RR, Judd LM, Lam MMC, Wyres KL, Stanton TD, et al. 2021¶ The impact of viral mutations on recognition by SARS-CoV-2 specific T cells Silva TID, Liu G, Lindsey BB, Dong D, Moore SC, Hsu SN, Shah DR, et al. Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study Twohig KA, Twohig KA, Nyberg T, Zaidi A, Thelwall S, Sinnathamby MA, Aliabadi S, et al.