eris 🧬🍏✨¶
eris performs graph-aware contextual annotation of targeted genomic features, using assembly graph topology (GFA) and local gene synteny to resolve complex, fragmented, or repetitive bacterial loci.
Key Capabilities¶
- Assembly Graph Traversal: Reconstructs locus paths across contig breaks in short-read or hybrid assembly graphs where contiguous linear sequences fail.
- Fast Gene Prediction: Integrates with pyfgs and Kaptive 3 for rapid open reading frame calling and contextual locus curation.