rammappy¶
rammappy is a high-performance Python interface to rammap, exposing fast Rust-backed minimap2 sequence alignment primitives directly to Python bioinformatics workflows with minimal memory overhead.
Key Capabilities¶
- Zero-Copy Ergonomics: Align nucleotide sequences directly from Python objects without spawning external subprocesses or parsing temporary PAF files on disk.
- Ecosystem Integration: Built to accelerate Python genomic typing tools such as Kaptive 3, bart, and eris.